BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005E04LP1|AL425380
(659 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig446 580 e-165
>3x_Contig446
Length = 2461
Score = 580 bits (288), Expect = e-165
Identities = 558/650 (85%), Gaps = 9/650 (1%)
Strand = Plus / Minus
Query: 10 tgaacgttctctacatgatgctttatgtgtgatccgttgtttggttaaagaaagagcstt 69
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 1401 tgaacgttctctacatgatgctttatgtgtcatccgttgtttggttaaagaaagagcctt 1342
Query: 70 kattggaggtggtggtgcgccagaaattgaagtttsatascgtstaatgaaggaagsgsg 129
|||| |||||||||||| |||||||||||||||| ||| ||| |||||||||||| | |
Sbjct: 1341 gattgcaggtggtggtgccccagaaattgaagtttcataccgtctaatgaaggaagcgcg 1282
Query: 130 tasgatggaaggtgtggaagsatttgtttgggaagagtatggagaagsactagaagtgat 189
|| |||||||||||||||| |||||||||| ||||||||| ||||| ||||||||| ||
Sbjct: 1281 taccatggaaggtgtggaagcatttgtttggcaagagtatgcagaagcactagaagtcat 1222
Query: 190 tssaagcgagattagggcgagaatgcaggtttgaatagtttgaatgttgtgacggagtta 249
| || ||| |||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1221 tccaa-cgacatta-gccgagaatgcaggtttgaatagtttgaatgttgtcacggagtta 1164
Query: 250 ggtttgagagacgaaaatggtgaatgsaattstggtatttgcggtaagaggttstggtag 309
|||||||| ||||||||||||||| |||| |||||||| |||||||| ||| |||||
Sbjct: 1163 cgtttgagacacgaaaatggtgaatccaattctggtattt-cggtaagacgttctggta- 1106
Query: 310 cgctgaaatagttaggaagaggatattgctagaagcgctgttgtagtatggagaagtgga 369
|| ||||| ||| ||||| ||||| ||| || ||||| |||||| | ||||| |
Sbjct: 1105 -cctcaaatacttacgaagaccatatt-ctacaa--cctgttctagtatccacaagtgca 1050
Query: 370 atgaggttgggttgtgaatgtgttaagtgtattgtaggtattgatgatatgagtttgagt 429
|| ||||||| || |||||||||||||| |||| || ||||||||||||| | ||| |||
Sbjct: 1049 atcaggttggcttctgaatgtgttaagtctattctacgtattgatgatatcactttcagt 990
Query: 430 ggttaataggggaatgtagtttgttgtggtaaatagatttgtagattaaaaaggaaagtg 489
||||||||| |||||||||| || | |||||||||||||| |||||||| |||| ||
Sbjct: 989 cgttaataggccaatgtagtttcttctcctaaatagatttgtacattaaaaacgaaactg 930
Query: 490 ataatatagtttagaataatattgtagtggctttagaaatattaatagtaaggaggtata 549
||||||||||||||||||||||| || | ||||||||||||||||| ||| || ||||
Sbjct: 929 ataatatagtttagaataatattctact-cctttagaaatattaatactaaccagctata 871
Query: 550 tagaagattaggattggggttaggaggacgagatggatttgggtttgaaggaaagttgtt 609
|| ||||||| |||||| |||| ||| |||||||||||||| ||||||| |||||||||
Sbjct: 870 tacaagattacgattggcgttacgagcacgagatggatttgcctttgaagcaaagttgtt 811
Query: 610 gtttgtaaatggagagggaaagggcgaagatgtatcsacccaaattatgc 659
||| |||||| ||| | |||||||||||||||||| ||| |||||||||
Sbjct: 810 ctttctaaatgcagacgcaaagggcgaagatgtatcgaccaaaattatgc 761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4093
Number of Sequences: 1807
Number of extensions: 4093
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 659
length of database: 10,358,551
effective HSP length: 16
effective length of query: 643
effective length of database: 10,329,639
effective search space: 6641957877
effective search space used: 6641957877
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.2 bits)